Jianjun Jin

Optimal values cannot be given prior to a successful run, otherwise it will be incorporated into the software. Does the 3-4 day running finish with good results? If so, attach...

Thanks for getting back. Hope you are doing well. As we can see from the `--reduce-reads-for-coverage inf --max-reads inf` log file, the pre-assembly coverage estimation of 12286 is quite close...

> Hi @Kinggerm , thank you so much for such a fast response. I am really glad for that and I will try this approach and get back to you...

How about making the databases or a file storing the path under "~/.GetOrganelle" by default?

In the latest update (version 1.7.3), sort by priority, 1. The database for each single run can be customized using a command line parameter following the flag "--config-dir". 2. If...

I just noticed that this is for Galaxy project, my collaborator @wbyu has mentioned many times of adding GetOrganelle to Galaxy. We are very interested in contributing. Please let me...

We have a simulated mini-data along with the command: Example 1/2 (https://github.com/Kinggerm/GetOrganelle/wiki/Examples) and a few real test data (also very small ones): Example 3/4/5 (https://github.com/Kinggerm/GetOrganelle/wiki/Examples)

Thanks for the feedback. Sorry about the remaining issues - now I believe I have fixed it and tested it in different ways. Please find the latest version at github....

@bernt-matthias I just made several updates and fixes to a new GetOrganelle version, in which I switched from optparse to argparse. It's currently on a different branch from the master:...

1.7.4 is now formally released with all above requirements fulfilled.