Could I use GetOrganelle to catch organelle gnome data form nanopore-sequencing data?

[daiwei199802]

Dear@Kinggerm

Thank you for your constant updates to the software. I'd like to ask for advice if it's convenient for you. That how to use GetOrganelle to capture organelle genome data from the third generation nanopore-sequencing data? I have a batch of third-generation denovo sequencing data, as shown in this picture, 120G in total form one embryophyta plant species,which is one-way sequencing. Since it is different from the previous double-ended sequencing, I’m wondering should I concatenate these data and use “get_organelle_from_reads.py -u” to capture my organelle genome data. Or I'd like to hear your opinion on how to deal with it.

Thank you sincerely.

[Kinggerm]

Currently GetOrganelle does not support long read extension. But you may also refer to this related issue

[daiwei199802]

Thanks for your promptly reply.I will try Traversome and looking forward your update for those software.