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Making GetOrganelle with PacBio Hi-Fi assembly

Open Kinggerm opened this issue 3 years ago • 0 comments

Currently, 1.7.4 works with Hifiasm GFA output (the *asm.p_utg.gfa file) with a minimal test. I'm working on accepting HiCanu GFA output in my spare time.

Generally, I do not think using long read along is the good approach, but a combination of long reads and short reads will benefit the most from data and generate more reasonable assemblies. I'm working on Traversome carrying this idea (unfinished).

Kinggerm avatar Apr 14 '21 14:04 Kinggerm