Disentangling failed when assemble plant mitochondria genome

[shiyi-pan]

Hi, I want to use GetOrganelle to assemble plant mitochondria genome and meet a problem. Here is my log file and result files:

assemble_plant_mitochondria.zip

I have used the mitochondrial genomes of related species as seeds.Could you give me some suggestions ? Thank you very much.

[Kinggerm]

File not found.

Besides, with only the Illumina data, one should expect no complete mitogenome in most cases due to the abundant repeats. Even without repeats, GetOrganelle is not used for a complete-in-one-step assembly for plant mitogenomes due to the influence from cp in the assembly graph.

[shiyi-pan]

Thank you for your reply. I upload the file again. By the way, is there a pipeline to assembly for plant mitogenomes with GetOrganelle ? assemble_plant_mitochondria.zip