open-cravat
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vest and chasmplus: report FDR
In addition to reporting the p-value, can you also please output the FDR? Thanks.
The current OpenCravat software architecture relies on fetching pre-computed annotations one variant at a time. FDR calculations depend on the entire user-submitted data in a run, so it cannot be pre-computed. However, we are currently working on incorporating FDR calculations computed “on the fly” for both VEST and CHASMplus.