Process was automatically killed

[yanjw123]

smudgeplot.py hetkmers -o kmcdb_L"$L"_U"$U" < kmcdb_L"$L"_U"$U".dump Running smudgeplot v0.2.5 Task: hetkmers Kmers and coverages loaded. Killed

[KamilSJaron]

Hi, that means you run out of memory (or the process does something else your computer does not like).

In general, I would just recommend to use more efficient smudge_pairs algorithm, or even better, give us a few weeks. The new updated release will have this process a lot more optimised.

[gongshuang33]

I also encountered a similar problem. When I ran the code "smudgeplot.py hetkmers -o kmcdb_L"$L"_U"$U" < kmcdb_L"$L"_U"$U".dump", my.dump file was about 10GB in size, and the memory usage kept increasing during the running process, eventually growing to over 300GB. If the server memory was insufficient, the program would be killed. Of course, if the server had enough memory, the program would run normally and produce output, but it would take several days.Thank you and all the best!

[KamilSJaron]

For the lack of capacity, I am just posting this here: https://github.com/KamilSJaron/smudgeplot/issues/137#issuecomment-1899308542