Kai Li

Hi there, Here is a bug to export batch spectra. I will fix it in next version. I noticed you only need one spectra. Could you please try this way...

By the way, you can open PDV directly inside FragPipe right now. It will provide more information than standalone version. 

OK. I will try to fix it this week. Will let you you after updating the release.

I optimized some steps in FragPipe version, but I don't have time to update the codes here. Could you try if it helps? And the batch export function in FragPipe...

Hi, I just updated the package. Could you try it? https://www.dropbox.com/s/d0qmm08luix0gcv/FP-PDV-1.0.3.jar?dl=0 Enter FragPipe folder and replace FP-PDV-1.0.3.jar with this new one:  There is a button to export selected spectra:...

As I showed in the previous post, you could try to open PDV inside FragPipe using the new package I shared with you. You don't need to import psm.tsv by...

What's the raw file type? And how many raw files do you have?

Thanks, @anesvi! After changing mgf to mzml in the next version, we could open it much faster. I am testing that part. @perhag972 sorry for the inconvenience. I will send...

I see. Will let you know if I have any updates.

Hi Witek, Sorry for the inconvenience. Could you please share your files with me? You know, sometimes after converting the raw files, the software might make some changes in the...