Kai Li

Thanks for your clarification. I didn't see any new files in shared folder. But based on your previous data, I could get this information.  PDV extracts RT and m/z...

Hi Yishai, Fragpipe now supports export results into PDV directly. You could click the "Open FragPipe-PDV viewer" on the "Run" panel after finishing the analysis in Fragpipe.  Kai

If you want to visualize the closed result, you could point your result folder in the "Output dir" field on the "Run" panel and click the "Viewer" button:  Please...

May I ask which version of Fragpipe you are using right now? 18.x or 19.x? Fragpipe 19 changed some file names in the result folder. If you open the old...

FragPipe 19 changed a lot in result folder structure. Based on your log file, this is the result generated by FragPipe 18. If you want to visualize this result, please...

Hi, First, please copy the parameter file `"mqpar.xml"` into the combined folder (the reason causing this error). You could put all interested pure peptide sequences in your "tab2.txt" and set...

Sorry, I still need some time to test the new MaxQuant results.

If you are using FragPipe later than V18, you could directly open your result in your FragPipe GUI by selecting the output folder on the "Run" panel. If you are...

Hi Nils, Sorry for the late reply. I can't access your link. Could you upload your files here: https://www.dropbox.com/request/zZ6ew6O79dHZEzGH1sEZ I will test and update it in the future. Kai

Sorry, I can't see you picture. Could you share it again?