KabitaBaral1

Hi, pySCENIC verision I used: 0.10.0+9.gceaad7d Installation method: Conda Run environment: Jupyter notebook except grn and ctx were run in CLI OS: MacOS Catalina 10.15.2 Package versions: # Name Version...

Hi, I tried it all and still get the regulon message and the same error. Not sure if it is relevant, but right after the regulon name error I get...

Hello, Thank you for such detail response! It is much clearer to me now! Yes, indeed, I am working with a high variable gene-marker regions used for haplotyping and keep...

Hi @dpcook @JBreunig @jpezoldt , My dataset is too big for GENIE3 and I have been trying to run GRNboost using the vignette as suggested in https://arboreto.readthedocs.io/en/latest/examples.html However, I feel...

Hi @JBreunig Thank you. I was wondering if you used Jupyter Notebook or CLI for grn step of pyscenic? I am using Jupyter Notebook and I keep running into weird...

Thank you @JBreunig Just one more question, which version of dask, distributed, pandas, msgpack and tornado do you use? I seem to get errors associated with version incompatibility even when...

Thank you very much @JBreunig. Hopefully it works. Thanks again

Hi @JBreunig Sorry to bug again, I tried running my code in linux and I get this very long error. Did you ever run into something like this? Could you...

Thank you very much @JBreunig . I tweaked it and got it to work, except the part where I have to put the outputs from GRN, AUCell and regulon together...

Hi, Thank you for the help. Yes, I somehow fixed it but I get another error while trying to write into a loom file using the command: export2loom(df_tpm.T, regulons, LOOM_FNAME_1,...