Monopogen
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bam.lst file format
Hello! Im having a bit of difficulty generating the bam.lst file that will be used for data preprocessing. I had made my bam.lst file containing the paths to the bam files (both of then A.bam and B,bam) provided in the example directory in the following way:
${path}/example/A.bam,
${path}/example/B.bam,
However, it seems like the Bam file isn't able to be found from the following error message:
AssertionError: Bam file cannot be found!
I was wondering if you would be able to clarify the format of the bam.lst file needed by the software and whether I am simply able to provide the path to the example directory inside the bam.lst file.
Thank you for your help!