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Published 20 hours ago • verified publisher icon KChen-lab

region "-o" specifies an unknown reference name

Open ariannadib opened this issue 2 months ago • 1 comments

HI! I'm having a problem with the cellScann module, in particular I can't understand the reason for this error: INFO Monopogen.py Get single cell level information from sequencing data... INFO:main:Get single cell level information from sequencing data... [main_samview] region "-o" specifies an unknown reference name. Continue anyway. [main_samview] region "/Users/Arianna/Monopogen/out_D545/Bam/chr1.filter.targeted.bam" specifies an unknown reference name. Continue anyway.

the samtools version should be the correct one (samtools 1.2, htslib1.2.1)

ariannadib avatar May 03 '24 09:05 ariannadib