Monopogen
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Error about data preprocess
Hello!Thank you for developing monopogen! I run the code:python ${path}/src/Monopogen.py preProcess -b test.lst -o 01.test -a ${path}/apps,but got error like this:
multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/public/home/user/program/miniconda3/envs/monopogen/lib/python3.7/multiprocessing/pool.py", line 121, in worker result = (True, func(*args, **kwds)) File "/public/home/user/program/miniconda3/envs/monopogen/lib/python3.7/multiprocessing/pool.py", line 44, in mapstar return list(map(*args)) File "/public/home/user/program/Monopogen/src/germline.py", line 206, in BamFilter if val < max_mismatch: UnboundLocalError: local variable 'val' referenced before assignment """
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/public/home/user/program/Monopogen/src/Monopogen.py", line 435, in
I would appreciate if you can help me. Thank you very much!