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INSTALL_b38.md :: ClinSV requires python2 AND python3

Open EricDeveaud opened this issue 2 years ago • 1 comments

Hello,

I noticed in the install from sources documentation, more specifically in install python section. https://github.com/KCCG/ClinSV/blob/master/INSTALL_b38.md#install-python

python2 is required clinsv uses python2 for lumpy calls lumpy requires numpy pysam

python3 is required to clinsv uses python3 for pairend_distro-a1.py see: line 460. of clinsv requires numpy NB I did not check if pairend_distro-a1.py use some python3 specific syntax, except for print maybee it means that clinsv can rely only in python2 using from future import print

regards

Eric

EricDeveaud avatar Jan 19 '23 11:01 EricDeveaud