Error (exit status:256)

[tomlodz]

Hello,

I have a little problem with ClinSV. Both versions on dockers v0.9 and v1.0, after some time from the start of processing, the analysis stops with the following message:

finished after (hh:mm:ss): 00:00:00
exist status: 256

***** error exist status != 0 (256), please check /app/project_folder/SVs/joined/lumpy/sh/lumpy.caller.joined.e for more information

The lumpy.caller.joined.e file says that there is no bam file in the directory. This file should probably be generated during the analysis itself. Below is the content of the file:

export PATH=/app/clinsv/bin:/app/clinsv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

    PATH=/app/clinsv/bin:/app/clinsv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
    declare -A meanArr
    declare -A stdevArr
    declare -A readLArr
    ++ samtools view /app/project_folder/alignments/1.bam/1.bam.bam chr1:1000000-1100000
    ++ cut -f 10
    ++ awk '{ print length}'
    ++ sort -rn
    ++ awk '(NR==1){print}'
    [E::hts_open_format] fail to open file '/app/project_folder/alignments/1.bam/1.bam.bam'
    samtools view: failed to open "/app/project_folder/alignments/1.bam/1.bam.bam" for reading: No such file or directory
    readLArr[1.bam]=

Thanks in advance