exist status 256 in lumpy.caller.joined

[jezdip1]

hello, I am trying to run your docker image for clinsv1.0. following the steps in https://github.com/KCCG/ClinSV for docker with the sample NA12878_b38, all works fine. when I tried my *.bam and *.bai data, prepared and referenced to GRCh38 using nf-core/sarek pipeline, the docker instance stops at this step OK # job bigwig, createWigs, MCD1319_2009KNO ran successfully (exit=0) -> skip : /app/project_folder/alignments/MCD1319_2009KNO/bw/sh/bigwig.createWigs.MCD1319_2009KNO.sh

OK # job bigwig, q0, MCD1319_2009KNO ran successfully (exit=0) -> skip : /app/project_folder/alignments/MCD1319_2009KNO/bw/sh/bigwig.q0.MCD1319_2009KNO.sh

OK # job bigwig, q20, MCD1319_2009KNO ran successfully (exit=0) -> skip : /app/project_folder/alignments/MCD1319_2009KNO/bw/sh/bigwig.q20.MCD1319_2009KNO.sh

OK # job bigwig, mq, MCD1319_2009KNO ran successfully (exit=0) -> skip : /app/project_folder/alignments/MCD1319_2009KNO/bw/sh/bigwig.mq.MCD1319_2009KNO.sh

OK # job lumpy, preproc, MCD1319_2009KNO ran successfully (exit=0) -> skip : /app/project_folder/SVs/MCD1319_2009KNO/lumpy/sh/lumpy.preproc.MCD1319_2009KNO.sh

executing: sh /app/project_folder/SVs/joined/lumpy/sh/lumpy.caller.joined.sh &> /app/project_folder/SVs/joined/lumpy/sh/lumpy.caller.joined.e ...

finished after (hh:mm:ss): 03:15:18

exist status: 256

***** error exist status != 0 (256), please check /app/project_folder/SVs/joined/lumpy/sh/lumpy.caller.joined.e for more information

the corresponding *.e file says something about "Parameter required for mean" seems to me, there is a parsing error or something similar

lumpy.caller.joined.e.gz

can you please have a look and tell me what I am doing wrong? or how could I move forward?