Julia LD

I'm using MaSuRCA v.3.4.1 to assemble paired-end, mate-paired and nanopore data of a ~2Gb lizard genome. I have used MaSuRCA many times before but I encountered this error: > [Tue...

Empty .psmcfa file

10

I am running the following code: ``` samtools mpileup -uf ref.fasta sorted.bam | bcftools call -c | vcfutils.pl vcf2fq | gzip > Cmar.fq.gz psmc/utils/fq2psmcfa -q20 Cmar.fq.gz > Cmar.psmcfa psmc/psmc -N25...

./install.sh error: undefined reference

7

Hello. When running ./install.sh I get a very long message, ending with: `collect2: error: ld returned 1 exit status make: *** [CONSENT-correction] Error 1` When tracing through it, the message...