Josua Krause

thanks for the report :) looks like a bad interaction between `virtualenv` and `anaconda`. I was able to reproduce after installing anaconda. I will look into it. [this bug](https://github.com/ContinuumIO/anaconda-issues/issues/305) might...

alternatively you can call `setup.sh` without using `pip` (that is: `./setup.sh --ccs --omop --psql`) and make sure all [required packages](https://github.com/nyuvis/patient-viz/blob/master/requirements.txt) are installed via anaconda (before doing so clean the directory...

Oh my bad -- I forgot that `--psql` needs `pip` as well. Please make sure to have [`psycopg2`](https://github.com/psycopg/psycopg2) installed if you want database access (that is the case with `--omop`)...

yes, you have to download and process the example data. you can follow instructions [here](https://github.com/nyuvis/patient-viz/blob/master/cms_shelve.md#cms-setup). keep in mind, that since you don't use `pip` you have to write the full...

hi, all URLs appear in `setup.sh`. the easiest way to retrieve the raw data in full is to run `setup.sh` (with the data sources that you want in the arguments;...

Yes, I agree :) The order from bottom to top is by first occurrence of a given type of event. Count is the number of times an event of a...

Time spans when a patient is hospitalized are shown with a blue background (see #52 for visual feature explanations). Currently hospitalization is not yet considered when reading from OMOP though...

> Do we have hospitalization in OMOP, or is this something we need to ask Aarti about? > > cheers, > David it's in the `visit` table

7185323e02b2e6b07261f0b275a838b8d3c6bb6b implements a basic detection of hospitalization from the visit table (for the visit concept 'Inpatient Visit')

I'm using the python SQLAlchemy library for accessing the CDM. The library is db-engine agnostic and I can add an option for users to choose a different one than Postgres...