MP2RAGE-related-scripts icon indicating copy to clipboard operation
MP2RAGE-related-scripts copied to clipboard

Updated BIDS convention

Open agahkarakuzu opened this issue 4 years ago • 5 comments

@marcelzwiers I saw that you wrote some BIDS wrappers for MP2RAGE data. Unfortunately the convention you described has undergone some changes as the extension proposal evolved.

Data would look like:

└── sub-01/
     └── anat/
         ├── sub-01_inv-1_part-mag_MP2RAGE.nii.gz
         ├── sub-01_inv-1_part-phase_MP2RAGE.nii.gz
         ├── sub-01_inv-1_MP2RAGE.json
         ├── sub-01_inv-2_part-mag_MP2RAGE.nii.gz
         ├── sub-01_inv-2_part-phase_MP2RAGE.nii.gz
         ├── sub-01_UNIT1.nii.gz
         ├── sub-01_UNIT1.json
         └── sub-01_inv-2_MP2RAGE.json

The B1+ maps are going to have suffix TB1map and going to be accessible from the derivatives folder.

agahkarakuzu avatar Dec 08 '20 05:12 agahkarakuzu

True, I noticed that too and even started to adapt the wrappers. But I paused that because the BEP001 proposal was retracted by you :-). I am happy to update my code if you can assure me a bit that the above structure is here to stay...

marcelzwiers avatar Dec 08 '20 09:12 marcelzwiers

@marcelzwiers majority of the proposal has been merged, will be a part of the release 1.5.0, so they are here to stay :)

agahkarakuzu avatar Dec 08 '20 20:12 agahkarakuzu

The B1+ maps are going to have suffix TB1map and going to be accessible from the derivatives folder.

Thanks, I will make the changes, but TB1map?

marcelzwiers avatar Dec 15 '20 19:12 marcelzwiers

@marcelzwiers TB1map for transmit and RB1map for receive fields.

agahkarakuzu avatar Dec 15 '20 19:12 agahkarakuzu

I finally came to update my BIDS wrappers to BIDS v1.5 (see #10)

marcelzwiers avatar Mar 17 '21 14:03 marcelzwiers