Jose Guzman

Hi @mndiguilmi, I think Kilosort is suited to have linear probes (neuropixels-like). When I use a multi-shank probe, I design the file so that every shank is deeper in the...

I'm not sure if Kilosort2 rewrites params.py after sorting for a second or third time. Did you try to delete all files generated by Kilosort2.5 and start over again? It's...

I think the key point is when using probes with blanked channels. Now when I use old probes with blanked channels, Phy show the channels numbered from zero to (n...

Exactly, it happens when some channels are disconnected.

What works for me now in Kilosort2.5: * setting `ops.minFR = 1/600;` * setting `ops.nblocks = 0`; * no removing any channel in the probe (all connected)

good to know, I also think using Phy via ssh has not the highest priority!

Hi, I am facing exactly the same situation. I have **spyking-circus 0.8** from the [master](https://github.com/spyking-circus/spyking-circus) repository in a conda environment with Ubutu 18.04 with the following packages and versions: ```bash...

Thank you very much @yger , @crnolan , it worked like a charm!

If I want to use [phy](https://github.com/cortex-lab/phy), I understand that all what I'd have to do is: ```bash $ git clone https://github.com/cortex-lab/phy $ cd phy $ conda activate spyking-circus $ pip...

Would you please report us the Stimfit version and your operating system?