Mask3D
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JonasSchult
MinkowskiEngine Undefined Symbol
Hi, I am wondering if anyone has any ideas for the below issue?
>>> import MinkowskiEngine as ME
/home/tq422/Mask3D/third_party/MinkowskiEngine/MinkowskiEngine/__init__.py:36: UserWarning: The environment variable `OMP_NUM_THREADS` not set. MinkowskiEngine will automatically set `OMP_NUM_THREADS=16`. If you want to set `OMP_NUM_THREADS` manually, please export it on the command line before running a python script. e.g. `export OMP_NUM_THREADS=12; python your_program.py`. It is recommended to set it below 24.
warnings.warn(
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/tq422/Mask3D/third_party/MinkowskiEngine/MinkowskiEngine/__init__.py", line 53, in <module>
from MinkowskiEngineBackend._C import (
ImportError: /home/tq422/anaconda3/envs/mask3d_cuda113/lib/python3.10/site-packages/MinkowskiEngine-0.5.4-py3.10-linux-x86_64.egg/MinkowskiEngineBackend/_C.cpython-310-x86_64-linux-gnu.so: undefined symbol: _ZN9minkowski8cpu_gemmIdEEv12CBLAS_LAYOUT15CBLAS_TRANSPOSES2_iiiT_PKS3_S5_S3_PS3_
Conda Env
conda list
# packages in environment at /home/tq422/anaconda3/envs/mask3d_cuda113:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main anaconda
_openmp_mutex 5.1 1_gnu anaconda
absl-py 1.4.0 pypi_0 pypi
addict 2.4.0 pypi_0 pypi
aiohttp 3.8.4 pypi_0 pypi
aiosignal 1.3.1 pypi_0 pypi
albumentations 1.2.1 pypi_0 pypi
antlr4-python3-runtime 4.8 pypi_0 pypi
anyio 3.6.2 pypi_0 pypi
appdirs 1.4.4 pypi_0 pypi
asttokens 2.2.1 pypi_0 pypi
async-timeout 4.0.2 pypi_0 pypi
attrs 23.1.0 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
black 21.4b2 pypi_0 pypi
blas 1.0 openblas anaconda
boltons 23.0.0 py310h06a4308_0 anaconda
brotlipy 0.7.0 py310h7f8727e_1002 anaconda
bzip2 1.0.8 h7b6447c_0 anaconda
ca-certificates 2024.7.2 h06a4308_0 anaconda
cachetools 5.3.0 pypi_0 pypi
certifi 2024.7.4 py310h06a4308_0 anaconda
cffi 1.15.1 py310h5eee18b_3 anaconda
charset-normalizer 2.0.4 pyhd3eb1b0_0 anaconda
click 8.1.3 pypi_0 pypi
cloudpickle 2.1.0 pypi_0 pypi
comm 0.1.3 pypi_0 pypi
conda 23.3.1 py310h06a4308_0 anaconda
conda-content-trust 0.1.3 py310h06a4308_0 anaconda
conda-package-handling 2.0.2 py310h06a4308_0 anaconda
conda-package-streaming 0.7.0 py310h06a4308_0 anaconda
configargparse 1.5.3 pypi_0 pypi
contourpy 1.0.7 pypi_0 pypi
cryptography 39.0.1 py310h9ce1e76_0 anaconda
cycler 0.11.0 pypi_0 pypi
cython 0.29.37 pypi_0 pypi
dash 2.9.3 pypi_0 pypi
dash-core-components 2.0.0 pypi_0 pypi
dash-html-components 2.0.0 pypi_0 pypi
dash-table 5.0.0 pypi_0 pypi
debugpy 1.6.7 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
detectron2 0.6 pypi_0 pypi
docker-pycreds 0.4.0 pypi_0 pypi
executing 1.2.0 pypi_0 pypi
fastapi 0.95.1 pypi_0 pypi
fastjsonschema 2.16.3 pypi_0 pypi
fire 0.4.0 pypi_0 pypi
flake8 6.0.0 pypi_0 pypi
flask 2.2.3 pypi_0 pypi
fonttools 4.39.3 pypi_0 pypi
frozenlist 1.3.3 pypi_0 pypi
fsspec 2023.4.0 pypi_0 pypi
fvcore 0.1.5.post20220512 pypi_0 pypi
gitdb 4.0.10 pypi_0 pypi
gitpython 3.1.31 pypi_0 pypi
google-auth 2.17.3 pypi_0 pypi
google-auth-oauthlib 1.0.0 pypi_0 pypi
grpcio 1.54.0 pypi_0 pypi
h11 0.14.0 pypi_0 pypi
hydra-core 1.0.5 pypi_0 pypi
idna 3.4 py310h06a4308_0 anaconda
imageio 2.21.1 pypi_0 pypi
importlib-metadata 3.10.1 pypi_0 pypi
iopath 0.1.10 pypi_0 pypi
ipykernel 6.22.0 pypi_0 pypi
ipython 8.12.0 pypi_0 pypi
ipywidgets 8.0.6 pypi_0 pypi
itsdangerous 2.1.2 pypi_0 pypi
jedi 0.18.2 pypi_0 pypi
jinja2 3.1.2 pypi_0 pypi
joblib 1.2.0 pypi_0 pypi
jsonpatch 1.32 pyhd3eb1b0_0 anaconda
jsonpointer 2.1 pyhd3eb1b0_0 anaconda
jsonschema 4.17.3 pypi_0 pypi
jupyter-client 8.2.0 pypi_0 pypi
jupyter-core 5.3.0 pypi_0 pypi
jupyterlab-widgets 3.0.7 pypi_0 pypi
kiwisolver 1.4.4 pypi_0 pypi
lazy-loader 0.2 pypi_0 pypi
ld_impl_linux-64 2.38 h1181459_1 anaconda
libffi 3.4.2 h6a678d5_6 anaconda
libgcc-ng 11.2.0 h1234567_1 anaconda
libgfortran-ng 11.2.0 h00389a5_1 anaconda
libgfortran5 11.2.0 h1234567_1 anaconda
libgomp 11.2.0 h1234567_1 anaconda
libopenblas 0.3.21 h043d6bf_0 anaconda
libstdcxx-ng 11.2.0 h1234567_1 anaconda
libuuid 1.41.5 h5eee18b_0 anaconda
loguru 0.6.0 pypi_0 pypi
markdown 3.4.3 pypi_0 pypi
markupsafe 2.1.2 pypi_0 pypi
matplotlib 3.7.1 pypi_0 pypi
matplotlib-inline 0.1.6 pypi_0 pypi
mccabe 0.7.0 pypi_0 pypi
minkowskiengine 0.5.4 pypi_0 pypi
multidict 6.0.4 pypi_0 pypi
mypy-extensions 1.0.0 pypi_0 pypi
natsort 8.3.1 pypi_0 pypi
nbformat 5.7.0 pypi_0 pypi
ncurses 6.4 h6a678d5_0 anaconda
nest-asyncio 1.5.6 pypi_0 pypi
networkx 3.1 pypi_0 pypi
ninja 1.10.2.3 pypi_0 pypi
nomkl 3.0 0 anaconda
numpy 1.24.2 pypi_0 pypi
oauthlib 3.2.2 pypi_0 pypi
omegaconf 2.0.6 pypi_0 pypi
open3d 0.17.0 pypi_0 pypi
openblas-devel 0.3.21 h06a4308_0 anaconda
opencv-python-headless 4.7.0.72 pypi_0 pypi
openssl 1.1.1w h7f8727e_0 anaconda
packaging 23.0 py310h06a4308_0 anaconda
pandas 2.0.0 pypi_0 pypi
parso 0.8.3 pypi_0 pypi
pathspec 0.11.1 pypi_0 pypi
pathtools 0.1.2 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 9.5.0 pypi_0 pypi
pip 23.1 pypi_0 pypi
platformdirs 3.2.0 pypi_0 pypi
plotly 5.14.1 pypi_0 pypi
pluggy 1.0.0 py310h06a4308_1 anaconda
plyfile 0.7.4 pypi_0 pypi
portalocker 2.7.0 pypi_0 pypi
prompt-toolkit 3.0.38 pypi_0 pypi
protobuf 4.22.3 pypi_0 pypi
psutil 5.9.5 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pyasn1 0.5.0 pypi_0 pypi
pyasn1-modules 0.3.0 pypi_0 pypi
pycocotools 2.0.4 pypi_0 pypi
pycodestyle 2.10.0 pypi_0 pypi
pycosat 0.6.4 py310h5eee18b_0 anaconda
pycparser 2.21 pyhd3eb1b0_0 anaconda
pydantic 1.10.7 pypi_0 pypi
pydeprecate 0.3.2 pypi_0 pypi
pyflakes 3.0.1 pypi_0 pypi
pygments 2.15.1 pypi_0 pypi
pyopenssl 23.0.0 py310h06a4308_0 anaconda
pyparsing 3.0.9 pypi_0 pypi
pyquaternion 0.9.9 pypi_0 pypi
pyrsistent 0.19.3 pypi_0 pypi
pysocks 1.7.1 py310h06a4308_0 anaconda
python 3.10.9 h7a1cb2a_0 anaconda
python-dateutil 2.8.2 pypi_0 pypi
python-dotenv 0.20.0 pypi_0 pypi
python-multipart 0.0.6 pypi_0 pypi
pytz 2023.3 pypi_0 pypi
pyviz3d 0.2.28 pypi_0 pypi
pywavelets 1.4.1 pypi_0 pypi
pyyaml 5.4.1 pypi_0 pypi
pyzmq 25.0.2 pypi_0 pypi
qudida 0.0.4 pypi_0 pypi
readline 8.2 h5eee18b_0 anaconda
regex 2023.3.23 pypi_0 pypi
requests 2.28.1 py310h06a4308_1 anaconda
requests-oauthlib 1.3.1 pypi_0 pypi
rsa 4.9 pypi_0 pypi
ruamel.yaml 0.17.21 py310h5eee18b_0 anaconda
ruamel.yaml.clib 0.2.6 py310h5eee18b_1 anaconda
scikit-image 0.20.0 pypi_0 pypi
scikit-learn 1.1.2 pypi_0 pypi
scipy 1.9.0 pypi_0 pypi
sentry-sdk 1.20.0 pypi_0 pypi
setproctitle 1.3.2 pypi_0 pypi
setuptools 65.6.3 py310h06a4308_0 anaconda
six 1.16.0 pyhd3eb1b0_1 anaconda
smmap 5.0.0 pypi_0 pypi
sniffio 1.3.0 pypi_0 pypi
sqlite 3.41.2 h5eee18b_0 anaconda
stack-data 0.6.2 pypi_0 pypi
starlette 0.26.1 pypi_0 pypi
tabulate 0.9.0 pypi_0 pypi
tenacity 8.2.2 pypi_0 pypi
tensorboard 2.12.2 pypi_0 pypi
tensorboard-data-server 0.7.0 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
termcolor 2.2.0 pypi_0 pypi
threadpoolctl 3.1.0 pypi_0 pypi
tifffile 2023.4.12 pypi_0 pypi
tk 8.6.12 h1ccaba5_0 anaconda
toml 0.10.2 pypi_0 pypi
toolz 0.12.0 py310h06a4308_0 anaconda
torch 1.12.1+cu113 pypi_0 pypi
torch-scatter 2.1.2 pypi_0 pypi
torchvision 0.13.1+cu113 pypi_0 pypi
tornado 6.3 pypi_0 pypi
tqdm 4.65.0 py310h2f386ee_0 anaconda
traitlets 5.9.0 pypi_0 pypi
trimesh 3.14.0 pypi_0 pypi
typing-extensions 4.5.0 pypi_0 pypi
tzdata 2023.3 pypi_0 pypi
urllib3 1.26.15 py310h06a4308_0 anaconda
uvicorn 0.21.1 pypi_0 pypi
volumentations 0.1.8 pypi_0 pypi
wandb 0.15.0 pypi_0 pypi
wcwidth 0.2.6 pypi_0 pypi
werkzeug 2.2.3 pypi_0 pypi
wheel 0.37.1 pyhd3eb1b0_0 anaconda
widgetsnbextension 4.0.7 pypi_0 pypi
xz 5.2.10 h5eee18b_1 anaconda
yacs 0.1.8 pypi_0 pypi
yarl 1.8.2 pypi_0 pypi
zipp 3.15.0 pypi_0 pypi
zlib 1.2.13 h5eee18b_0 anaconda
zstandard 0.19.0 py310h5eee18b_0 anaconda
I experienced the same issue when executing "bash /home/lz23/model_code/Mask3D-main/scripts/stpls3d/stpls3d_val.sh".
