How does MTAG handle duplicate rs ids and variants that are not SNPs?

[Mahantesh-Biradar]

When I run MTAG I see logs about duplicate rs numbers and variants that are not SNPs being filtered. I would like to know how does MTAG handle these?

[JonJala]

It looks like it should be dropping them (see here https://github.com/JonJala/mtag/blob/master/mtag.py#L320). Could you share your log file so we could see what lines you mean?

On Thu, May 12, 2022 at 1:43 PM Mahantesh Biradar @.***> wrote:

When I run MTAG I see logs about duplicate rs numbers and variants that are not SNPs being filtered. I would like to know how does MTAG handle these?

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