João Rodrigues
João Rodrigues
- [x] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [x] I have read the...
Follow-up to #4256, we should replace the print statements in the NCBIXML module by either calls to `warnings` or to `sys.stderr`, to be easier to ignore/discard. Labelling this as a...
For debugging puposes, it would be nice to include the `rid` and `rtoe` (that we already extract) in the output of the `qblast` function, or at least in a debug...
Make use of more recent libraries to generate the contact files. Change format for something readable, no need to use fancy numbers (performance hit is likely minimal).
Example: do clustering only using contacts involving residues 1-10 of chain A.
The current setup of the unit tests is likely to break if you try to run `run_tests.py`. I did not test this on powerfit (don't have dependencies installed) but it...
More of a recommendation than a real 'issue'. Each script should have its own description and usage written at the top of the file, and print this if ran without...
Hi there, Super cool project you have here! As the list of countries in the dashboard grows, it'll be hard to have all in the same page. One possible idea...
Would be great to have a way of selecting groups of atoms using a Pymol-like selection language, like `mdtraj` or `MDAnalysis` do.