Jochem Nelen

Hi @JeongSooNa , Just some general debugging questions/advice: - Do other proteins (not from the test set) work for you? Maybe there was some error when converting the pdb to...

@JeongSooNa The cache is located in data/cache_torsion/ and data/cache_torsion_allatoms/ If you remove the content of those folders, the cache is removed!

Hi @JeongSooNa, The error you mention: > Encountered valid chain id that was not present in the LM embeddings I think this happens because the esm embedding generation failed. I...

Hi @JeongSooNa That structure did not give me any problems. Did it generate any error the first time you ran it? That is when the LM embeddings are generated (if...

> Following installation instructions step by step leads to issue installing two python packages as dependencies: > > ERROR: pip's dependency resolver does not currently take into account all the...