Jingtao Wang

@Jiayi-Zheng Hello Jiayi, I'm Jun's student and will try to help you with the issue. Firstly, could you confirm that you didn't add a '/' after this part of your...

@Jiayi-Zheng I looked into it and I guess the actual problem might not be the extra '/'. The problem might be with the input directory. The function (shutil.copy2) at line...

@Jiayi-Zheng Thanks for the information. Then another possibility is that the problem is with the output directory. Probably the code is trying to copy the whole '/usersdata/user/GW15_Trachea/GW15-Trachea/outs/mycell/2.bam' path into the...

Hi @Jiayi-Zheng , no need to install GATK since it's already included if you downloaded the bam2vcf file. Could you try to put everything into the bam2vcf folder as I...

@Jiayi-Zheng Hi sorry about the late reply. Could you send me the data so that I can take a look? My email is [email protected] If the bam file is too...

> running with the example with command "tbsp -i ./vcf_example -o test" also report errors: > > loop:7 Traceback (most recent call last): File "/data/home/fangch/liuwei/bin/anaconda3/lib/python3.8/site-packages/networkx/utils/decorators.py", line 396, in _random_state random_state_arg...