Jihed Chouaref

I reinstalled earlier using this ``` devtools::install_github("kieranrcampbell/ouija") ``` I'll try again

> Ah the assay should be "logcounts" or the `single_cell_experiment_assay` changed to "logcounts" -- I've updated the vignette to reflect this, my fault for not changing sooner. Also it looks...

I am sorry for bringing bad news to you today :( ```> sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: macOS 10.14.6 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK:...

Great it works! I have one more question, if you can help me, it would be great! I have managed to reproduce your example using the `data(example_gex)` but I still...

Sorry for not answering earlier. assay(test) returns this :  I am not so familiar with SCE object but this looks like a count...

Hi Kieran! Thanks for such a quick reply! ``` names(assays(test)) [1] "counts" "logcounts" ``` The SCE contained already the log counts apparently. I did run the command you suggested anyway...

ah ok! So I tried : ``` logcounts(test)

``` summary(colSums(logcounts(test))) Min. 1st Qu. Median Mean 3rd Qu. Max. 2041 2662 2916 2914 3161 3974 ```

yes sure! What is the issue with it ?

I have sent it to you via dropbox on the gmail address I found on your cv (I don't want to display it here)