Jihed Chouaref

Hi @ravipatel4 ! Could you elaborate a bit more? I would like to count how many reads I get into repetitive regions upstream certains genes. I have imported my own...

Few days later, it's still not working :( Here is what I get at step 14, when I want to call the DAR: ``` > x.sp = readRDS("ATAC12_step12.snap.rds") > x.sp...

> Sorry I found the solution, I was using `createPmat` to add peaks-to-cells. But if I use the `snaptools` command to do it then the error does not show up....

The cluster was a bit busy today, I hope it will run during the night

Hi Maarten, I have a good news, I tried the **atac-seq** workflow as well yesterday and it worked just fine, I'll try it today with my own samples. Concerning the...

Hi Maarten, I don't know how to do it, could you help me? I am using conda. I can't find where the scripts are saved in the environment. I could...

Ok great thanks for the quick reply!

So I tried two things: - add the sleep time as discussed above - change the genome to mm10 and use my own samples. And I have got the same...

Yes I will update you as soon as I can. I had a little issue with memory space which slowed me a bit. Now it should be okay.

Hi Maarten, Here is what I did to try to make the **chip-seq** workflow run. My plan was to try to align ChIP-seq SE data from mouse to mm10 using...