JianJun Jin

Assembling exited halfway - ERROR: No valid assembly graph found

10

>Take the liberty to borrow the post owner's place. I want to ask where my error occurred. It always occurs No valid Assembly graph found.@Kinggerm First, the code I used:get_organelle_from_reads.py...

fix a bug: summary_get_organelle_output.py does not recognize degenerate/ambiguous bases #279

Update the `cmake` version limit according to the requirement of `spoa` https://github.com/AntonBankevich/LJA/blob/99f93262c50ff269ee28707f7c3bb77ea00eb576/src/lib/spoa/CMakeLists.txt#L1

Expected alternative alignment not shown

4

Dear developers, Thank you for developing this excellent tool! ### Test Data - the assembly graph file: [snp.graph.gfa.txt](https://github.com/maickrau/GraphAligner/files/10914521/snp.graph.gfa.txt) - a 15009-bp single-read file: [test_reads.11_13946.fastq.txt](https://github.com/maickrau/GraphAligner/files/10914522/test_reads.11_13946.fastq.txt) ### Problem Description In the above...

Initialization font issue in MacOS Sonoma 14.4.1

2

Hello Dr. Wu, Thank you for developing this toolkit. It looks cool! I'm trying OGU and encounter the following font failures when initializing OGU: ``` $ python -m OGU init...