ReadBouncer
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JensUweUlrich
Fast and scalable nanopore adaptive sampling
Hi Jens-Uwe, I hade raised an issue on MinKnow not connecting correctly: I have attached link below, https://github.com/JensUweUlrich/ReadBouncer/issues/59#issue-1418263480 We haven't resolve yet any further assistance we be of much help....
I've been able to confirm that the build of readbouncer I'm running is working based on success with the classify test and being able to build the IBFs for the...
According to Daniel Lemire, exception handling is quite expensive ([https://lemire.me/blog/2022/05/13/avoid-exception-throwing-in-performance-sensitive-code/#comments](https://lemire.me/blog/2022/05/13/avoid-exception-throwing-in-performance-sensitive-code/#comments)). Thus, we should clean the code and avoid exceptions in all cases except reading and writing files.
add support for basecalling with [Dorado](https://github.com/nanoporetech/dorado)
Use minimum number of signals instead of minimum required read length => avoids basecalling of too small signal chunks and reduces basecalling errors
Wait with receiving signals and classification until MUX scan has finished
Log messages should pop up in message window of MinKNOW