Jean Fan

Hi Juan, Thanks for your patience. This is on my task list and I will get to it as soon as possible. My general sense that this error is related...

Hi, Thanks for using HoneyBADGER. A few questions for you that may help me better address your questions: 1. Are you using the allele, expression, or joint model for identifying...

Hi, For debugging purposes, it may be easier to use the functions outside the `hb` object as done in this tutorial: https://jef.works/HoneyBADGER/Integrating.html Please provide the error messages returned by these...

Thanks for catching and reporting this bug. It has been addressed in commit https://github.com/JEFworks/HoneyBADGER/commit/b3648e766d2e885910b5c0758b18c62a63ca3471

No problem at all. Thanks for the report. Let me reopen this issue for now so I can remember to address it when I get the chance.

Hi Yao, As you can tell from the lack of documentation, MUDAN is still in development (and a long ways away from publication). So I'm impressed by your willingness to...

Hi Jacob! Yes, your understanding is correct. > it looks like you are performing SVD on the covariance matrix Correct. Please look through the equations of the Stack Overflow post...

- [ ] allow row annotations - [ ] allow column annotations - [ ] heatmap color reverse? - [ ] drag to make panel heights bigger - [ ]...

Also the download buttons are not hooked up to download the plots. Issue of IDs referenced.

Some additional biology-related public datasets worth considering: ExAC - http://exac.broadinstitute.org/ (exome sequencing data for 60,706 unrelated individuals, including 1000 genomes) OMIM - http://www.omim.org/ (database of phenotype-genotype relationships) dbSNP - http://www.ncbi.nlm.nih.gov/SNP/...