PiRATE

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Progress with Docker version

4

Hi I'm really interested in using your pipeline for TE analysis of multiple different non-model organisms. I'd prefer to use your tool through Docker on the command line to speed...

brettChapman

Hi! PASTEC was working OK last week and now I got the following error. Fatal error: Exit code 1 () ERROR 1008 (HY000) at line 1: Can't drop database 'PASTEC_galaxy';...

adriludwig

TEannot Output

1

Hey Jeremy, thank you for constructing PiRATE, this is such a wonderful tool and it's easy to work with. I have done all the detection steps and classification successfully even...

KHANYAP4

TEdenovo error with 60bp file

11

I receive the following error message when when I try to run TEdenovo on my assembly ``` Fatal error: Exit code 1 () cat: /home/jeremy/galaxy/tools/Pipeline/REPET/WORK/genome_Blaster_Grouper_Map/genome_Blaster_Grouper_Map_consensus.fa: Aucun fichier ou dossier de...

pwkooij

TEs classified as potential chimeric

4

Hello Jeremy is it a wise choice to include TEs classified as potential chimeric in your TE library. If not what if an Order includes TEs classified as only potential...

Lukanyo12

Encountered error in Hmmer

2

Hello Jeremy, I encountered this error during my analysis with TE-HMMER. Fatal error: Exit code 134 () Translate nucleic acid sequences Fatal exception ( source file p7_alidisplay .c , line...

Lukanyo12

RepeatMasker encountered a line in an unrecognized format.

1

Hello, During the past couple weeks I tried to run several Detection steps with the PiRATE pipeline and all of them reported the same error. It is about invalid characters...

vtrinca

How to connect via FTP on tne Virtual Machine to transfert my data

1

**Several people ask for that:** Here is my tuto **1)Firsly check your Network Configuration in VirtualBox for the PiRATE-VM** Select Global Settings from the File menu --> Select the Network...

JBerthelier

How to set up the number of processor and slots for the tools TEdenovo, PASTEC and TEannot (REPET package) in PiRATE　： in a konsol: **sudo qconf -mq main** pasword...

JBerthelier

french keyboard in shell

1

I can't seem to change the keyboard in shell to english. I can't find / tried all the keys to see if can find it. Why not universal keyboard?

rob123king