John Barsotti

Vectorize Nipype

3

Hello, I hope you are well! Is it possible to vectorize nipype instead of using SGEGraph with it? I would like to avoid using a Sun Grid Engine if I...

Hi Mr. Ellis, I just wanted to thank you for some code you wrote on StackExchange a while ago. It was about the best ways to show error bounds on...

Sentiment Analysis

3

Would it be possible to use Trove to perform sentiment analysis on clinical notes? I have access to all the MIMIC-IV discharge notes but am struggling to find a good...

Does `tangram` allow the user to adjust p-values for multiple comparisons?

Amazing Work

1

Thanks so much for posting this! I'm currently implementing it in a research project just to see what kind of AUCs I can get using different methods on my data....

This is probably something I'm doing wrong, but I managed to get the TSAN algorithm working on my dataset (I think). However, the results are largely random noise. See image...

Segmentation Fault Using Pretrained Model

4

Dear Dr. Yang, Thank you for sharing the brain age TSCAN model you created on GitHub! It seems extremely interesting. I have been trying to use it on some brain...

Questions About Example Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb

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This is an amazing module. Thanks for all your hard work. I was working through the notebook [notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb](https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb), and I have a couple of questions: 1. Why do we need...

### Summary I'm trying to run the commands ``` ft = EulerNumber() ft.inputs.in_file = "path_to_my_file" ft.run() ``` ### Actual behavior I get an error: ERROR: Invalid FreeSurfer license key found...

Missing Variable(s) from `aseg.stats`

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Does anyone know when the variables **rhCorticalWhiteMatterVol** and **lhCorticalWhiteMatterVol** were removed from freesurfer and whether they were renamed or removed entirely?