Jiří Moravec

(HTML) Indices are changed after cells are merged with `rowspan`

2

This could perhaps be emphasized in documentation because it took me quite a bit to understand what is going on. 1. `style_tt(rowspan = ...)` to merge rows 2. `style_tt(j =...

Fixed linked site location for bbam tools

1

Fixed linked site location for bbam tools. Some inconsistencies that could be fixed as well: * most tools are pointing at general bbam documentation, some are however pointing at specific...

Link to `bbmap` is dead/moved.

1

### Description of the bug Link to bbmap (https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/) in [bbmap/bbsplit/meta.yml](https://github.com/nf-core/rnaseq/blob/33df0c05ef99d1d9af97d1d74681ab0452612abb/modules/nf-core/bbmap/bbsplit/meta.yml#L12C17-L12C80) is dead. New page is: `https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/` ### Command used and terminal output _No response_ ### Relevant files _No response_...

Can you append to current style?

2

I am styling my table according to https://janmarvin.github.io/openxlsx2/articles/openxlsx2_style_manual.html#styling-showcase. I run a lot of `wb_add_style`, which seems to be rewriting the current style altogether. Is there a way to append to...

I am trying to template my report a bit, but also keep everything clean by placing child documents in their own folder. It seems that the children are evaluated in...

Incorrect parsing of fig.path

1

`fig.path` has quite specific undocumented requirements and can fail in corner cases. MRE: ```r litedown::reactor(fig.path = "foo") litedown::fuse(text = "```{r} \n plot(1) \n```") ``` # File '.foochunk-1-1.png' not found (hence...

The problem lied deeper in fuse when the relative path "." was retained. This is now replaced in `fuse_code` before it is infused in the constructed link. Tests included.

This should help clarify future issues like #91

tabsets with generated images

8

I am currently trying to figure out how to generate tabsets from fenced divs using code. For text, this is relatively simple: ```` ```{r, results = "asis", echo = FALSE}...

I am building a static site generator to move from quarto to litedown. I am using the mustache template language implemented in the `whisker` package to translate individual `rmd` and...