Isaac Diaz

Hello, although I am now able to run giraffe in an array job. The mapping speed is still very slow ~ 80 reads / per second per thread. I then...

I specified 32 threads, and vg stats -l graph.gbz returns 400249670. Which is 50 Mb larger than the reference genome. Although other genomes used in the graph construction are closer...

How should I share it?

I can share it with you on google drive if that works for you

Just shared the folder to your ucsc email address

> I met the same problom,did you solve it? @IsaacDiaz026 I haven't yet, working on rebuilding a new pangenome graph first

> Did you change the distance index to read-only permissions? This helped me, but I am still having trouble with very slow read alignment

> I am running into this same issue, have you been able to figure it out?