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libtbb missing from some ITK 5.4.0 wheels
On my old linux box, pip install itk does not work anymore because libtbb is missing. Here is the list of commands I execute and the relevant output:
srit@russula:~> conda env create -y --name py39 python=3.9
srit@russula:~> conda activate py39
(py39) srit@russula:~> pip install itk
Collecting itk
Using cached itk-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting itk-core==5.4.0 (from itk)
Using cached itk_core-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting itk-numerics==5.4.0 (from itk)
Using cached itk_numerics-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting itk-io==5.4.0 (from itk)
Using cached itk_io-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting itk-filtering==5.4.0 (from itk)
Using cached itk_filtering-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting itk-registration==5.4.0 (from itk)
Using cached itk_registration-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting itk-segmentation==5.4.0 (from itk)
Using cached itk_segmentation-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl.metadata (22 kB)
Collecting numpy (from itk)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Using cached itk-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (17 kB)
Using cached itk_core-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (80.5 MB)
Using cached itk_filtering-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (67.5 MB)
Using cached itk_io-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (26.1 MB)
Using cached itk_numerics-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (56.2 MB)
Using cached itk_registration-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (27.2 MB)
Using cached itk_segmentation-5.4.0-cp39-cp39-manylinux_2_17_x86_64.whl (14.7 MB)
Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
Installing collected packages: numpy, itk-core, itk-numerics, itk-io, itk-filtering, itk-segmentation, itk-registration, itk
Successfully installed itk-5.4.0 itk-core-5.4.0 itk-filtering-5.4.0 itk-io-5.4.0 itk-numerics-5.4.0 itk-registration-5.4.0 itk-segmentation-5.4.0 numpy-1.26.4
(py39) srit@russula:~> python
Python 3.9.19 (main, May 6 2024, 19:43:03)
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import itk
i>>> itk.Image[itk.F, 3].New()
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/srit/miniconda3/envs/py39/lib/python3.9/site-packages/itk/support/lazy.py", line 138, in __getattribute__
base.itk_load_swig_module(module, namespace)
File "/home/srit/miniconda3/envs/py39/lib/python3.9/site-packages/itk/support/base.py", line 94, in itk_load_swig_module
itk_load_swig_module(dep, namespace)
File "/home/srit/miniconda3/envs/py39/lib/python3.9/site-packages/itk/support/base.py", line 130, in itk_load_swig_module
l_module = loader.load(swig_module_name)
File "/home/srit/miniconda3/envs/py39/lib/python3.9/site-packages/itk/support/base.py", line 289, in load
l_spec.loader.exec_module(l_module) # pytype: disable=attribute-error
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/home/srit/miniconda3/envs/py39/lib/python3.9/site-packages/itk/support/../ITKPyBasePython.py", line 63, in <module>
from itk.pyBasePython import *
File "/home/srit/miniconda3/envs/py39/lib/python3.9/site-packages/itk/pyBasePython.py", line 15, in <module>
from . import _ITKCommonPython
ImportError: libtbb.so.12: cannot open shared object file: No such file or directory
>>>
(py39) srit@russula:~> find miniconda3/envs/py39 -name libtbb*
(py39) srit@russula:~>