Spectre icon indicating copy to clipboard operation
Spectre copied to clipboard

Real or technical artifacts due to errors detected in UMAP following run.flowsom()?

Open denvercal1234GitHub opened this issue 1 year ago • 2 comments

Hi there,

Thanks for the package.

When I used run.flowsom even with meta.k=20 (automatic meta.k resolved 11 clusters), the cluster UMAP doesn't look "right" -- they clumped together on 1 side of the UMAP, and there two tiny clusters that are so separated from everyone.

Do you think these 2 clusters (6 and 20) are simply artifacts? If so, would you mind suggesting some ways to assess that?

Thank you for your help!

Screenshot 2023-04-27 at 12 07 09

Related to #154.

denvercal1234GitHub avatar Apr 27 '23 11:04 denvercal1234GitHub