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Real or technical artifacts due to errors detected in UMAP following run.flowsom()?
Hi there,
Thanks for the package.
When I used run.flowsom
even with meta.k=20
(automatic meta.k
resolved 11 clusters), the cluster UMAP doesn't look "right" -- they clumped together on 1 side of the UMAP, and there two tiny clusters that are so separated from everyone.
Do you think these 2 clusters (6 and 20) are simply artifacts? If so, would you mind suggesting some ways to assess that?
Thank you for your help!
Related to #154.