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Published 20 hours ago • verified publisher icon Illumina

estimate data (BAM format) processing time (manta 1.6.0)

Open jeffchen2000 opened this issue 4 years ago • 0 comments

I have 500 human WGS samples (depth=20x), and I ran on a cluster with SGE (10 threads, 40GB for each threads with a total 400GB Momory).

now 3 days passed, the program runs normally (No error message), but I am new to manta, can any one tell me

  1. can manta deal this large data set?
  2. did I set enough memory?
  3. how long it will take to finish the data processing (I used all chromosomes including short contigs from HG38)

jeffchen2000 avatar Oct 21 '20 01:10 jeffchen2000