Ieremie Ioan

I have a similar problem, where the predicted structure has missing residues.

Alphafold source code contains the implementation for the LDDT measure!

@apayne97 [lddt-implementation](https://github.com/google-deepmind/alphafold/blob/7c9114c8423ac9db981d8365168464bab09b3e54/alphafold/model/lddt.py#L19) This is how I use it, maybe it is of help. ```python target_struct = parser.get_structure("a", f"{root}structures/{prot_id}.pdb")[0] target_coord = np.array([res["CA"].get_coord() for res in target_struct.get_residues()]) target_coord = target_coord[None, :, :]...