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redirect sam to standard output for piping

Open EA2106-Universite-Francois-Rabelais opened this issue 3 years ago • 3 comments

Dear ModularAligner team, thank you very much for your great job setting up a new read aligner. In order to include it into already existing pipelines, could it be possible to allow maCMD to write the .sam to standard output instead of writing to a file? processing tools could be piped in that way to speed up the process.

Thank you very much!

Best regards,