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Change env python

Open KristinaGagalova opened this issue 4 years ago • 4 comments

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/python

but it's from conda. You should change the header of the python files in order to have that working

#!/usr/bin/env python

Thank tou in advance!

KristinaGagalova avatar Nov 10 '20 01:11 KristinaGagalova

That is an interesting suggestion. Thank you! I will discuss it with my colleagues.

Best, Dr. David E. Hufnagel

On Mon, Nov 9, 2020 at 7:50 PM Kristina Gagalova [email protected] wrote:

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/pythin

but it's from conda. You should change the header of the python files in order to have that working

#!/usr/bin/env python

Thank tou in advance!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ISUgenomics/SequelTools/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABQPE3LHXUEY2AH4TPRTJ5DSPCL75ANCNFSM4TQCDKOA .

DavidEHufnagel avatar Nov 10 '20 20:11 DavidEHufnagel

Thank you for your suggestion. It will be implemented soon!

Best, Dr. David E. Hufnagel

On Mon, Nov 9, 2020 at 7:50 PM Kristina Gagalova [email protected] wrote:

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/pythin

but it's from conda. You should change the header of the python files in order to have that working

#!/usr/bin/env python

Thank tou in advance!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ISUgenomics/SequelTools/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABQPE3LHXUEY2AH4TPRTJ5DSPCL75ANCNFSM4TQCDKOA .

DavidEHufnagel avatar Nov 10 '20 21:11 DavidEHufnagel

This change has now been implemented. Thanks again for the suggestion and best of luck with your research!

--Dr. David E. Hufnagel

On Tue, Nov 10, 2020 at 3:56 PM David Hufnagel [email protected] wrote:

Thank you for your suggestion. It will be implemented soon!

Best, Dr. David E. Hufnagel

On Mon, Nov 9, 2020 at 7:50 PM Kristina Gagalova [email protected] wrote:

Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in

/usr/bin/pythin

but it's from conda. You should change the header of the python files in order to have that working

#!/usr/bin/env python

Thank tou in advance!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/ISUgenomics/SequelTools/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABQPE3LHXUEY2AH4TPRTJ5DSPCL75ANCNFSM4TQCDKOA .

DavidEHufnagel avatar Nov 16 '20 16:11 DavidEHufnagel

Thanks guys for the tool, I am using it for my project! All the best Kristina

KristinaGagalova avatar Nov 16 '20 17:11 KristinaGagalova