SequelTools
SequelTools copied to clipboard
ISUgenomics
new repo
Hello, I'm running into some issues trying to run SequelTools for quality controls Beginning quality control function ``` Running in WITH_SCRAPS mode Traceback (most recent call last): File "/home/amanda/programas/SequelTools/Scripts/generateReadLenStats_wScraps.py", line...
Hey, I've installed SequelTool and when I run the following command, srun ./SequelTools.sh -t Q -u ../../0_sequelTool/bam_loc_file.txt -n 15 -o ../../0_sequelTool/ the tool crashed and write this error : Beginning...
Hi, I am currently using the SequelTools to perform some QC analysis on some of the PacBio subread sequence data. However, it reports the error message as following: Beginning quality...
Hello! I have _FILENAME_.bam.1 file downloaded from ncbi. How can I use it in SequelTools CLI? I am going to rename it (to left an '.1' suffix off) and to...
Hello Developers, Thanks for creating the SequelTools. Just a basic question, how is numReadsLongestSub defined. I tried to look in to the scripts to identity the cuotff, but could not...
Hi, I was running the SequelTools.sh for QC and I've got an error when calling python. My python is not in ``` /usr/bin/python ``` but it's from conda. You should...
Hi, I had several files and I've noticed that it took quite a lot of time to run the QC even with ```-n 24``` option. Looks like the awk and...
Hi, I needed to restart sequeltools for QC and I've noticed that it starts from the beginning of the run. Could you pelase add an intermediary files check and avoid...
Hi, I'm running SequelTools for 8 CLR samples. I'm giving the sample names with `-u subfiles.txt` option. In the subfiles.txt file I put the address of the bam files. This...
Hello, Could you please help me out? I am getting the following error message after running Read Sampling Tool and tried with different options (-T lr, -Tlr 0.2, -T l,...
