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Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or...

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Example getExpressionSet

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The base.url provided in the getExpressionSet example is no longer accessible. The example, therefore, can not be executed. I have no other way to assess this function and check it's...

mverouden avatar mverouden

Use all factors as phenoData for XCMS

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Hi, Currently, processAssayXcmsSet() will obtain the first factor from the ISAtab and use it as sampclass() for the xcmsSet. It would be great if all factors were used. Below is...

sneumann avatar sneumann

creating xcmsSet only works from within unzipped ISA directory

otherwise some path error while creating xcmsSet

sneumann avatar sneumann

Risa package missing from Bioconductor 3.19

For some reason, the Risa package is missing from Bioconductor 3.19. Once I installed all the dependencies, I was able to get the 3.18 source archive to compile and install...

rkjulian avatar rkjulian

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verified publisher icon ISA-tools

Metadata

Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or...

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