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Assigning role twice via API causes server error 500

Open vera opened this issue 2 years ago • 2 comments

What steps does it take to reproduce the issue?

  1. Assign role on a dataset using the API: https://guides.dataverse.org/en/latest/api/native-api.html#assign-a-new-role-on-a-dataset
  2. Assign the same role again to the same user
  • What happens?

The second time, Dataverse responds with a 500 server error and an error message in the form of "Command edu.harvard.iq.dataverse.engine.command.impl.AssignRoleCommand@xyz failed: Transaction aborted"

  • What did you expect to happen?

I expected the role assignment to fail gracefully, i.e.

  • not send an error status code or send an error status code in the 4xx range
  • send a helpful error message like "This role is already assigned to this user/group on this dataset"

(note: I didn't check if the same thing happens when assigning roles on dataverses, but I assume so)

Which version of Dataverse are you using?

5.13

Any related open or closed issues to this bug report?

not aware

Server log:

[#|2023-07-21T13:54:01.776+0000|SEVERE|Payara 5.2022.4|edu.harvard.iq.dataverse.api.AbstractApiBean|_ThreadID=101;_ThreadName=http-thread-pool::http-listener-1(5);_TimeMillis=1689947641776;_LevelValue=1000;|
  Error while executing command edu.harvard.iq.dataverse.engine.command.impl.AssignRoleCommand@33ff80d6
edu.harvard.iq.dataverse.engine.command.exception.CommandException: Command edu.harvard.iq.dataverse.engine.command.impl.AssignRoleCommand@33ff80d6 failed: Transaction aborted
	at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:287)
	at jdk.internal.reflect.GeneratedMethodAccessor215.invoke(Unknown Source)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.base/java.lang.reflect.Method.invoke(Unknown Source)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4835)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at jdk.internal.reflect.GeneratedMethodAccessor167.invoke(Unknown Source)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.base/java.lang.reflect.Method.invoke(Unknown Source)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
	at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
	at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at jdk.internal.reflect.GeneratedMethodAccessor152.invoke(Unknown Source)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.base/java.lang.reflect.Method.invoke(Unknown Source)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4807)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4795)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
	at com.sun.proxy.$Proxy358.submit(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngine__Intf____Bean__.submit(Unknown Source)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.execCommand(AbstractApiBean.java:572)
	at edu.harvard.iq.dataverse.api.Datasets.createAssignment(Datasets.java:1770)
	at jdk.internal.reflect.GeneratedMethodAccessor941.invoke(Unknown Source)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.base/java.lang.reflect.Method.invoke(Unknown Source)
	at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory.lambda$static$0(ResourceMethodInvocationHandlerFactory.java:52)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:134)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:177)
	at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:176)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:81)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:475)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:397)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:81)
	at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:255)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
	at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
	at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:234)
	at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:684)
	at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:394)
	at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:358)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:311)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
	at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1637)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
	at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
	at edu.harvard.iq.dataverse.api.ApiBlockingFilter.doFilter(ApiBlockingFilter.java:169)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:30)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
	at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
	at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
	at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:34)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:167)
	at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
	at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
	at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
	at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
	at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
	at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
	at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
	at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:201)
	at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
	at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
	at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
	at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
	at java.base/java.lang.Thread.run(Unknown Source)
Caused by: javax.transaction.RollbackException: Transaction marked for rollback.
	at com.sun.enterprise.transaction.JavaEETransactionImpl.commit(JavaEETransactionImpl.java:519)
	at com.sun.enterprise.transaction.JavaEETransactionManagerSimplified.commit(JavaEETransactionManagerSimplified.java:960)
	at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:666)
	at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482)
	at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4601)
	at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2134)
	at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2104)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
	at com.sun.proxy.$Proxy395.submit(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngineInner__Intf____Bean__.submit(Unknown Source)
	at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:276)
	... 106 more
Caused by: javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.7.9.payara-p2): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: org.postgresql.util.PSQLException: ERROR: duplicate key value violates unique constraint "unq_roleassignment_0"
  Detail: Key (assigneeidentifier, role_id, definitionpoint_id)=(@testuser, 6, 49) already exists.
Error Code: 0
Call: INSERT INTO ROLEASSIGNMENT (ASSIGNEEIDENTIFIER, PRIVATEURLANONYMIZEDACCESS, PRIVATEURLTOKEN, DEFINITIONPOINT_ID, ROLE_ID) VALUES (?, ?, ?, ?, ?)
	bind => [5 parameters bound]
Query: InsertObjectQuery(RoleAssignment{id=null, assignee=@testuser, role=DataverseRole{id=6, alias=contributor}, definitionPoint=[Dataset id:49 ]})
	at org.eclipse.persistence.internal.jpa.EntityManagerSetupImpl$1.handleException(EntityManagerSetupImpl.java:788)
	at org.eclipse.persistence.transaction.AbstractSynchronizationListener.handleException(AbstractSynchronizationListener.java:277)
	at org.eclipse.persistence.transaction.AbstractSynchronizationListener.beforeCompletion(AbstractSynchronizationListener.java:172)
	at org.eclipse.persistence.transaction.JTASynchronizationListener.beforeCompletion(JTASynchronizationListener.java:70)
	at com.sun.enterprise.transaction.JavaEETransactionImpl.commit(JavaEETransactionImpl.java:480)
	... 117 more

vera avatar Jul 21 '23 14:07 vera

This issue is more or less the same as this one:

  • #1503

However, it probably makes more sense to work on this new issue first. "API first" as we say.

@vera are you interested in making a pull request?

pdurbin avatar Jul 21 '23 17:07 pdurbin

@pdurbin :+1: In principle, I am interested in making a PR but I am not sure how soon I will have the time.

vera avatar Sep 18 '23 14:09 vera