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Add Allen Brain Atlas ontologies (with bridges)

Open dosumis opened this issue 2 years ago • 2 comments

These are now all available from the following PURLs

https://purl.brain-bican.org/ontology/mbao/mbao-base.owl https://purl.brain-bican.org/ontology/dmbao/dmbao-base.owl https://purl.brain-bican.org/ontology/hbao/hbao-base.owl https://purl.brain-bican.org/ontology/dhbao/dhbao-base.owl

Bridges to Uberon are folded in.

Uses:

  • Adding these will allow UberGraph to support queries of brain regions from these ontologies, returning cell types from PCL. In future we may link CL terms to these too.

dosumis avatar Dec 18 '23 17:12 dosumis

As of the next update, CL will have MBA (mbao) terms too. MBA is tightly integrated with Uberon (lots of curation went into this a couple of years ago) plus recent work as resolved inconsistencies in MBA + Uberon, which I think strengthens the case for adding. No need to add bridge as it is folded into the product.

dosumis avatar Jul 09 '25 10:07 dosumis

@dosumis I refreshed Ubergraph; want to check MBA?

balhoff avatar Jul 16 '25 14:07 balhoff