Add instructions on how to set up an ubergraph instance with a custom set of ontologies

[cmungall]

We would like an ubergraph instance with ENVO, PO, perhaps FOODON - and maybe also the LinkML OWL translations of MIxS (@hrshdhgd we will make this correspond with our OLS instance)

Should we set up our own instance and run on AWS? Or can we put into the main instance?

If we set up our own instance it looks like we should be able to figure from the Makefile, we can contribute back docs later

cc @turbomam @wdduncan @hrshdhgd

[balhoff]

I'm inclined to grow this Ubergraph as large as possible, at least adding ENVO, PO, and FOODON. I know less about MIxS, but if you think it's a good idea then probably so.

[balhoff]

@cmungall PO doesn't seem to have a base file, do you think they can make one? cc @matentzn

[balhoff]

Same for FOODON.

[turbomam]

@balhoff Is PO in this context the protein ontology? What's a base file in this context?

[balhoff]

@turbomam PO is Plant Ontology. Coincidentally Protein Ontology also doesn't provide a base file, but I am simulating one: https://github.com/NCATS-Tangerine/ubergraph/blob/8e1a2938e4dcc1c1a104dcd0cbcd375e65a3a1a8/Makefile#L18-L24

I can temporarily do that for PO and FOODON as well. I will send you a link to my base file manifesto. 😉

[turbomam]

I WILL READ THE MANIFESTO, SIR!

[cmungall]

See also https://github.com/INCATools/ontology-development-kit/pull/410

and https://github.com/INCATools/ontology-development-kit/issues/411