ontology-development-kit
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INCATools
Bootstrap an OBO Library ontology
See here https://github.com/obophenotype/cell-ontology/pull/754 We need to do this soon, so I can update CL properly.
It used to be standard to add new terms from external ontologies by adding a new root term to Protege, pasting in the IRI of the new term. This =>...
Recommendations by @jamesoverton ``` ###Configuration # # These are standard options to make Make sane: # MAKEFLAGS += --warn-undefined-variables SHELL := bash .SHELLFLAGS := -eu -o pipefail -c .DEFAULT_GOAL :=...
Once this is merged: https://github.com/ontodev/robot/pull/481 We can add standard TSV products. I would propose that a TSV is made for every product - e.g. subsets, base file, basic, merged Note...
List provided by @sierra-moxon | Ontology | JSON | | ---- | ---- | | GO | [JSON (subsets)](http://geneontology.org/docs/download-ontology/) | | SO | - | | DOID | - |...
Given that not all ontologies that are release are actually present in the repo, this would only work if there was a way to obtain the latest release string somehow...
Can we converge on a common `project.yml` file schema? Background: As discussed in #298, I'm very keen to follow ODK's lead on lots of things, even though I usually want...
I would like to finalise this question now a bit: How can we trigger an ontology release from a Jenkins job. Our setup now often looks something like this: A)...
We could add a default code of conduct here: https://github.com/INCATools/ontology-development-kit/tree/master/template But the challenge is that people making a repo will not necessarily be explicitly endorsing the code of conduct because...
As well as turning owl diff summaries into markdown it would be good to turn commit messages into one line summaries for a Changes.md General conventions - summarize each change...