ontology-development-kit
ontology-development-kit copied to clipboard
INCATools
Bootstrap an OBO Library ontology
Currently, when initialising a new repository the seeding process generates a `.gitignore` file, but when updating an existing repository the `.gitignore` file is _not_ updated – instead, migrating it is...
Daff is an amazing framework for diffing tables: https://github.com/paulfitz/daff ``` pip install daff daff --input-format tsv m1.sssom.tsv m2.ols.sssom.tsv > diff.tsv daff render --input-format tsv diff.tsv > diff.html ``` Gives us...
## Overview Some `make` goals involve downloading the latest releases of artefacts at some stable URL. However, oftentimes when the goal is run, there has not been a change to...
https://github.com/mikefarah/yq wget https://github.com/mikefarah/yq/releases/download/${VERSION}/${BINARY} -O /usr/bin/yq &&\ chmod +x /usr/bin/yq This will be useful when building applications on top of mapping commons which will make use of a lot of yaml.
We have recently finally defined a recommendation for shaping base files: https://github.com/OBOAcademy/obook/pull/387 The one thing that is still not addressed is what to do about GCIs with complex RHS, which...
From our acceptance email: ``` If you haven't already, please take the time to update your project's Hub pages to include a detailed project description, links to your project source...
With the next OAK release, `runoak apply` will now: - preserve the original ordering of lines in unaltered stanzas - order lines in altered stanzas However, it turns out to...
When an ontology uses ISBNs in cross-references (typically, to indicate the source of a definition or a synonym), the ODK could provide a test to ensure that all ISBNs mentioned...
## Overview I did a recent build ([1](https://github.com/monarch-initiative/mondo-ingest/pull/434#discussion_r1597726007), [2](https://github.com/monarch-initiative/mondo-ingest/issues/477)), and noticed that several files were being removed; IDK why. I made some of the goals `.PRECIOUS`, which solved the problem...