ontology-development-kit
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INCATools
Bootstrap an OBO Library ontology
When running ODK in Windows, a [bug in the Docker framework](https://forums.docker.com/t/docker-desktop-windows-2-2-0-0-containers-cant-find-files/87587) causes `run.bat` to fail with `File not found`. A horrific but very windows looking workaround is to modify run.bat...
There are some questions now and then on where ODK starts and the ROBOT ends; to roll out both widely, it would be good to understand the core job each...
https://docs.travis-ci.com/user/migrate/legacy-services-to-github-apps-migration-guide/ Not sure how this impacts us, if it's just a matter of providing additional documentation for people cc @kltm
Maybe we can add a section in the README-editors.md, or create a [seperate doc ala HPO](https://github.com/obophenotype/human-phenotype-ontology/blob/master/src/ontology/QC.md). In any case it would be good if QC is clearly explained somewhere (on...
When running command `./seed-via-docker.sh -d po -d ro -d pato -u cmungall -t "Triffid Behavior ontology" triffo`, I received the error: ``` raceback (most recent call last): File "/tools/odk.py", line...
https://github.com/INCATools/ontology-development-kit/blob/cac94046d633e88acaa515a256b311a6697ea3ce/odk/odk.py#L521 this should specify the relative path for maximum portability If a different path is required in the docker container, then this should be passed in the docker conf
Terminology: native axioms are axioms belonging to an ontology; foreign axioms belong to another ontology and are imported. Typically native axioms are: - all axioms which mention at least one...
In particular, add the version of each ontology imported as metadata on the ontology, perhaps in the form of a rdfs:comment?
This happened for example with [FBCV](https://github.com/FlyBase/flybase-controlled-vocabulary/issues/71). There is a definition that contains a foreign term and a relation. Now simple does this: 1. Get all classes in namespace 2. Get...
@cmungall will show how this is done for mondo