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Add ROBOT template merge pipeline as option to ODK

Open matentzn opened this issue 3 years ago • 2 comments

The purpose is to bulk add term data provided in the form of a table to an ontologies editors file, like in MONDO, RO and other ontologies.

matentzn avatar Mar 25 '22 17:03 matentzn

Is this related to the option to support the ROBOT template in the components?

Test example

If it's related to it, this was fixed in the commit https://github.com/INCATools/ontology-development-kit/commit/de2d837940c8830b42ab28bfe9e42d4af25c8233 and it has been available since ODK 1.4.

anitacaron avatar Sep 21 '23 15:09 anitacaron

No, it is adding this here as a .PHONY goal: https://github.com/monarch-initiative/mondo/blob/master/src/ontology/mondo.Makefile#L668 or https://github.com/information-artifact-ontology/ontology-metadata/blob/master/src/ontology/omo.Makefile#L13

This is super useful for cases where you want to rapidly push a template into the editors file, and not maintain it as a component.

matentzn avatar Sep 29 '23 19:09 matentzn