Add tmp/{oid}-edit.owl as a goal to all pipeline to allow arbitrary preprocessing

[matentzn]

Right now, running ontology preprocessing is cumbersome, in fact, not really possible: we kinda have to apply any changes like taxon constraint materialisation and others in complex custom chains, and even use tricks like SRC="tmp/edit.owl" in make, see FBbt pipeline. I think we should simply add a single preprocessing step:

SRCBUILD=tmp/$(ONT)-edit.owl
$(SRCBUILD): $(SRC)
      cp $< $@

and replace all references in the Makefile from $(SRC) to $(SRCBUILD). So by default, no global preprocessing is applied. If the user wants to apply global preprocessing, they simply overwrite $(SRCBUILD).

Feedback to this idea welcome.

[matentzn]

Explainer: customised preprocessing is currently not possible at all because there is no common goal on which all release artefacts depend other than $(SRC).

[gouttegd]

Just a quick feedback in passing: love it! 👍

[anitacaron]

@matentzn reminder

[shawntanzk]

in Dev version already https://github.com/INCATools/ontology-development-kit/pull/639, will be released in next version.

[matentzn]

Re-opening as there is a serious bug: --catalog does not work correctly.

[matentzn]

Bug was not real. Imagined.