Docs: `search`: regex / operators clarification

[joeflack4]

Overview

I was reading through https://incatools.github.io/ontology-access-kit/intro/tutorial01.html#search and also compared against https://incatools.github.io/ontology-access-kit/cli.html#runoak-search, and in the former, there are some syntax that you can use, like ^, and ~, as well as / for full regex, but that is not mentioned in the CLI command docs. Just wondering if: (i) it should be, (ii) if what I mentioned here was an exhaustive list, or if there are more.

As I look through the docs more, I see that the guide is naturally more thorough than the CLI reference. I think it makes sense for the guide to have more examples and exposition, but I do think things like options and syntax probably ought to be in the CLI reference as well.

[cmungall]

Good catch! The search syntax is powerful but the documentation is not well organized

On Mon, Jul 17, 2023 at 4:59 PM Joe Flack @.***> wrote:

Overview

I was reading through https://incatools.github.io/ontology-access-kit/intro/tutorial01.html#search and also compared against https://incatools.github.io/ontology-access-kit/cli.html#runoak-search, and in the former, there are some special regex-like syntax that you can use, like ^, and ~, but that is not mentioned in the CLI command docs. Just wondering if: (i) it should be, (ii) if ^ and ~ is an exhaustive list, or if there are more.

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